PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G215900.2
Common NameB456_004G215900, LOC105792257
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 681aa    MW: 76139 Da    PI: 4.8065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G215900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444.1e-14481527455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Gorai.004G215900.2 481 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 527
                         7999**********************8.....8*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-529186IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.88E-19477545IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.625477526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.32E-15481531No hitNo description
PfamPF000101.1E-11481526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-19481543IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-17483532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MAAPPSSRLQ KMLQAAVQSV QWTYSLFWQI CPQQGILIWS DGYYNGAIKT RKTVQPMEVS  60
TEEASLQRSQ QLRELYDSLS SGDTNQPARR PSAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKTVLCIPIL DGVLELGYTE KVQEDLGLVQ  180
HVKTFFNDGK APNPPPPKPA LSEHSTSNPA ASSDYTRFHS PSIPLVYAAA DPPVNADQGE  240
YNNVDEEEEE EEEDDDDEEG DEEPESYSAE TGRTTQQVPT ENTLAVVAAE EPSELMQLDM  300
SEDIKLGSPD DASNNLDSDF NMLAVSQSGN PTDNQRRAEL FRDESNRRWQ MLQEPSCGSL  360
QPLSTGPQPV DEMSQEDTHY SQTVSTILQA QLARWTESPS TVNAATYSTQ SAFAKWTTHS  420
DHHLHSAVVE GTSQWLLKYI LFTVPFLHNK YRDENSPKLR DAAVAAARFR KGTPNEDLSA  480
NHVLAERRRR EKLNERFIIL RSLVPFVTKM DKASILGDTI EYVKQLRKKI QDLETRNKQM  540
EADNDRPRSA DSMQRNSSSK DQRSGLTTRS SGPDKKKMRI AEATKQKTAE PAPQTAETSV  600
EVSIIESDAL LELQCGYREG LLLDIMQMLR EKLRIEITAV QSSLNNGLFT AELRAKVKDN  660
MNGKKVSIME VKRAINQIIP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-2191879193Transcription factor MYC3
4rqw_B2e-2191879193Transcription factor MYC3
4rs9_A2e-2191879193Transcription factor MYC3
4yz6_A2e-2191879193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1485490ERRRRE
2486491RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6988700.0KP698870.1 Gossypium raimondii basic helix-loop-helix protein 064D (bHLH064D) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476198.10.0PREDICTED: basic helix-loop-helix protein A-like isoform X2
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0D2R8K80.0A0A0D2R8K8_G
STRINGVIT_07s0104g00090.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-90bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Yan Q, et al.
    The Basic/Helix-Loop-Helix Protein Family in Gossypium: Reference Genes and Their Evolution during Tetraploidization.
    PLoS ONE, 2015. 10(5): p. e0126558
    [PMID:25992947]